Summary
This report contains visualisations of statistics that can help in understanding the results from the wf-alignment workflow. Each section contains different plots or tables, and in general the results are broken down by sample or the reference file to which alignments were made. You can quickly jump to an individual section with the links in the header bar.
1 sample:barcode95
1 reference file:
reference.txt
1 reference sequence:
KU168830.1
| Metric | Value | Percentage |
|---|---|---|
| Detected reference sequences | 1 |
|
| Reads | 5,061 |
|
| Reads aligned to 'reference.txt' | 1,513 |
|
| Unmapped reads | 3,548 |
|
| Bases | 36,553,998 |
|
| Metric | Value | Percentage |
|---|---|---|
| Detected reference sequences | 1 |
|
| Reads | 5,061 |
|
| Reads aligned to 'reference.txt' | 1,513 |
|
| Unmapped reads | 3,548 |
|
| Bases | 36,553,998 |
|
Read and alignment summary statistics
Read quality and length in addition to alignment accuracy and coverage are illustrated in the plots below.
Depth of coverage
This section illustrates the depth of coverage of the reference genomes. The left plot shows coverage vs. genomic position (note that the coordinates on the x-axis are the positions along the concatenated reference including all reference sequences in the respective reference file). The right plot shows the cumulative fraction of the reference that was covered to at least a certain depth.